- Heavy clay soils are regarded as less permeable due to their low saturated hydraulic conductivities, and are perceived as safe for the construction of unlined or soil-lined waste lagoons. Water percolation dynamics through a smectite-dominated clayey vadose zone underlying a dairy waste lagoon, waste channel and their margins was investigated using three independent vadose-zone monitoring systems. The monitoring systems, hosting 22 TDR sensors, were used for continuous measurements of the temporal variation in vadose zone water-content profiles. Results from 4years of continuous measurements showed quick rises in sediment water content following rain events and temporal wastewater overflows. The percolation pattern indicated dominance of preferential flow through a desiccation-crack network crossing the entire clay sediment layer (depth of 12m). High water-propagation velocities (0.4-23.6mh -1) were observed, indicating that the desiccation-crack network remains open and serves as a preferential flow pathway year-round, even at high sediment water content (∼0.50m 3m -3). The natural formation of desiccation-crack networks at the margins of waste lagoons induces rapid infiltration of raw waste to deep sections of the vadose zone, bypassing the sediment's most biogeochemically active parts, and jeopardizing groundwater quality.